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This documents an unmaintained version of NetworkX. Please upgrade to a maintained version and see the current NetworkX documentation.

Source code for networkx.algorithms.components.strongly_connected

# -*- coding: utf-8 -*-
"""Strongly connected components.
"""
#    Copyright (C) 2004-2013 by
#    Aric Hagberg <hagberg@lanl.gov>
#    Dan Schult <dschult@colgate.edu>
#    Pieter Swart <swart@lanl.gov>
#    All rights reserved.
#    BSD license.
import networkx as nx
from networkx.utils.decorators import not_implemented_for
__authors__ = "\n".join(['Eben Kenah',
                         'Aric Hagberg (hagberg@lanl.gov)'
                         'Christopher Ellison',
                         'Ben Edwards (bedwards@cs.unm.edu)'])

__all__ = ['number_strongly_connected_components',
           'strongly_connected_components',
           'strongly_connected_component_subgraphs',
           'is_strongly_connected',
           'strongly_connected_components_recursive',
           'kosaraju_strongly_connected_components',
           'condensation']

@not_implemented_for('undirected')
[docs]def strongly_connected_components(G): """Generate nodes in strongly connected components of graph. Parameters ---------- G : NetworkX Graph An directed graph. Returns ------- comp : generator of lists A list of nodes for each strongly connected component of G. Raises ------ NetworkXNotImplemented: If G is undirected. See Also -------- connected_components, weakly_connected_components Notes ----- Uses Tarjan's algorithm with Nuutila's modifications. Nonrecursive version of algorithm. References ---------- .. [1] Depth-first search and linear graph algorithms, R. Tarjan SIAM Journal of Computing 1(2):146-160, (1972). .. [2] On finding the strongly connected components in a directed graph. E. Nuutila and E. Soisalon-Soinen Information Processing Letters 49(1): 9-14, (1994).. """ preorder={} lowlink={} scc_found={} scc_queue = [] i=0 # Preorder counter for source in G: if source not in scc_found: queue=[source] while queue: v=queue[-1] if v not in preorder: i=i+1 preorder[v]=i done=1 v_nbrs=G[v] for w in v_nbrs: if w not in preorder: queue.append(w) done=0 break if done==1: lowlink[v]=preorder[v] for w in v_nbrs: if w not in scc_found: if preorder[w]>preorder[v]: lowlink[v]=min([lowlink[v],lowlink[w]]) else: lowlink[v]=min([lowlink[v],preorder[w]]) queue.pop() if lowlink[v]==preorder[v]: scc_found[v]=True scc=[v] while scc_queue and preorder[scc_queue[-1]]>preorder[v]: k=scc_queue.pop() scc_found[k]=True scc.append(k) yield scc else: scc_queue.append(v)
@not_implemented_for('undirected')
[docs]def kosaraju_strongly_connected_components(G,source=None): """Generate nodes in strongly connected components of graph. Parameters ---------- G : NetworkX Graph An directed graph. Returns ------- comp : generator of lists A list of nodes for each component of G. Raises ------ NetworkXNotImplemented: If G is undirected. See Also -------- connected_components Notes ----- Uses Kosaraju's algorithm. """ with nx.utils.reversed(G): post = list(nx.dfs_postorder_nodes(G, source=source)) seen = {} while post: r = post.pop() if r in seen: continue c = nx.dfs_preorder_nodes(G,r) new=[v for v in c if v not in seen] seen.update([(u,True) for u in new]) yield new
@not_implemented_for('undirected')
[docs]def strongly_connected_components_recursive(G): """Generate nodes in strongly connected components of graph. Recursive version of algorithm. Parameters ---------- G : NetworkX Graph An directed graph. Returns ------- comp : generator of lists A list of nodes for each component of G. The list is ordered from largest connected component to smallest. Raises ------ NetworkXNotImplemented : If G is undirected See Also -------- connected_components Notes ----- Uses Tarjan's algorithm with Nuutila's modifications. References ---------- .. [1] Depth-first search and linear graph algorithms, R. Tarjan SIAM Journal of Computing 1(2):146-160, (1972). .. [2] On finding the strongly connected components in a directed graph. E. Nuutila and E. Soisalon-Soinen Information Processing Letters 49(1): 9-14, (1994).. """ def visit(v,cnt): root[v]=cnt visited[v]=cnt cnt+=1 stack.append(v) for w in G[v]: if w not in visited: for c in visit(w,cnt): yield c if w not in component: root[v]=min(root[v],root[w]) if root[v]==visited[v]: component[v]=root[v] tmpc=[v] # hold nodes in this component while stack[-1]!=v: w=stack.pop() component[w]=root[v] tmpc.append(w) stack.remove(v) yield tmpc visited={} component={} root={} cnt=0 stack=[] for source in G: if source not in visited: for c in visit(source,cnt): yield c
@not_implemented_for('undirected')
[docs]def strongly_connected_component_subgraphs(G, copy=True): """Generate strongly connected components as subgraphs. Parameters ---------- G : NetworkX Graph A graph. Returns ------- comp : generator of lists A list of graphs, one for each strongly connected component of G. copy : boolean if copy is True, Graph, node, and edge attributes are copied to the subgraphs. See Also -------- connected_component_subgraphs """ for comp in strongly_connected_components(G): if copy: yield G.subgraph(comp).copy() else: yield G.subgraph(comp)
@not_implemented_for('undirected')
[docs]def number_strongly_connected_components(G): """Return number of strongly connected components in graph. Parameters ---------- G : NetworkX graph A directed graph. Returns ------- n : integer Number of strongly connected components See Also -------- connected_components Notes ----- For directed graphs only. """ return len(list(strongly_connected_components(G)))
@not_implemented_for('undirected')
[docs]def is_strongly_connected(G): """Test directed graph for strong connectivity. Parameters ---------- G : NetworkX Graph A directed graph. Returns ------- connected : bool True if the graph is strongly connected, False otherwise. See Also -------- strongly_connected_components Notes ----- For directed graphs only. """ if len(G)==0: raise nx.NetworkXPointlessConcept( """Connectivity is undefined for the null graph.""") return len(list(strongly_connected_components(G))[0])==len(G)
@not_implemented_for('undirected')
[docs]def condensation(G, scc=None): """Returns the condensation of G. The condensation of G is the graph with each of the strongly connected components contracted into a single node. Parameters ---------- G : NetworkX DiGraph A directed graph. scc: list or generator (optional, default=None) Strongly connected components. If provided, the elements in `scc` must partition the nodes in `G`. If not provided, it will be calculated as scc=nx.strongly_connected_components(G). Returns ------- C : NetworkX DiGraph The condensation graph C of G. The node labels are integers corresponding to the index of the component in the list of strongly connected components of G. C has a graph attribute named 'mapping' with a dictionary mapping the original nodes to the nodes in C to which they belong. Each node in C also has a node attribute 'members' with the list of original nodes in G that form the SCC that the node in C represents. Raises ------ NetworkXNotImplemented: If G is not directed Notes ----- After contracting all strongly connected components to a single node, the resulting graph is a directed acyclic graph. """ if scc is None: scc = nx.strongly_connected_components(G) mapping = {} members = {} C = nx.DiGraph() for i, component in enumerate(scc): members[i] = component mapping.update((n, i) for n in component) number_of_components = i + 1 C.add_nodes_from(range(number_of_components)) C.add_edges_from((mapping[u], mapping[v]) for u, v in G.edges_iter() if mapping[u] != mapping[v]) # Add a list of members (ie original nodes) to each node (ie scc) in C. nx.set_node_attributes(C, 'members', members) # Add mapping dict as graph attribute C.graph['mapping'] = mapping return C