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Read and write NetworkX graphs.
Note that NetworkX graphs can contain any hashable Python object as node (not just integers and strings). So writing a NetworkX graph as a text file may not always be what you want: see write_gpickle and gread_gpickle for that case.
This module provides the following :
Edgelist format: Useful for connected graphs with or without edge data.
write_edgelist(G, path) G=read_edgelist(path)
Date:
Author: Aric Hagberg (hagberg@lanl.gov) Dan Schult (dschult@colgate.edu)
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Write graph G in edgelist format on file path. See read_edgelist for file format details. >>> write_edgelist(G, "file.edgelist") path can be a filehandle or a string with the name of the file. >>> fh=open("file.edgelist") >>> write_edgelist(G,fh) Filenames ending in .gz or .bz2 will be compressed. >>> write_edgelist(G, "file.edgelist.gz") The file will use the default text encoding on your system. It is possible to write files in other encodings by opening the file with the codecs module. See doc/examples/unicode.py for hints. >>> import codecs >>> fh=codecs.open("file.edgelist",encoding='utf=8') # use utf-8 encoding >>> write_edgelist(G,fh) |
Read graph in edgelist format from path. >>> G=read_edgelist("file.edgelist") path can be a filehandle or a string with the name of the file. >>> fh=open("file.edgelist") >>> G=read_edgelist(fh) Filenames ending in .gz or .bz2 will be compressed. >>> G=read_edgelist("file.edgelist.gz") nodetype is an optional function to convert node strings to nodetype For example >>> G=read_edgelist("file.edgelist", nodetype=int) will attempt to convert all nodes to integer type Since nodes must be hashable, the function nodetype must return hashable types (e.g. int, float, str, frozenset - or tuples of those, etc.) create_using is an optional networkx graph type, the default is Graph(), a simple undirected graph >>> G=read_edgelist("file.edgelist",create_using=DiGraph()) The comments character (default='#') at the beginning of a line indicates a comment line. The entries are separated by delimiter (default=' '). If whitespace is significant in node or edge labels you should use some other delimiter such as a tab or other symbol. Example edgelist file format: # source target a b a c d e or for an XGraph() with edge data # source target data a b 1 a c 3.14159 d e apple |
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