This documents an unmaintained version of NetworkX. Please upgrade to a maintained version and see the current NetworkX documentation.

Source code for networkx.drawing.nx_pydot


Import and export NetworkX graphs in Graphviz dot format using pydot.

Either this module or nx_pygraphviz can be used to interface with graphviz.

See Also
Pydot: http://code.google.com/p/pydot/
Graphviz:          http://www.research.att.com/sw/tools/graphviz/
DOT Language:  http://www.graphviz.org/doc/info/lang.html
#    Copyright (C) 2004-2013 by
#    Aric Hagberg <hagberg@lanl.gov>
#    Dan Schult <dschult@colgate.edu>
#    Pieter Swart <swart@lanl.gov>
#    All rights reserved.
#    BSD license.
from networkx.utils import open_file, make_str
import networkx as nx
__author__ = """Aric Hagberg (aric.hagberg@gmail.com)"""
__all__ = ['write_dot', 'read_dot', 'graphviz_layout', 'pydot_layout',
           'to_pydot', 'from_pydot']

[docs]def write_dot(G,path): """Write NetworkX graph G to Graphviz dot format on path. Path can be a string or a file handle. """ try: import pydot except ImportError: raise ImportError("write_dot() requires pydot", "http://code.google.com/p/pydot/") P=to_pydot(G) path.write(P.to_string()) return
[docs]def read_dot(path): """Return a NetworkX MultiGraph or MultiDiGraph from a dot file on path. Parameters ---------- path : filename or file handle Returns ------- G : NetworkX multigraph A MultiGraph or MultiDiGraph. Notes ----- Use G=nx.Graph(nx.read_dot(path)) to return a Graph instead of a MultiGraph. """ try: import pydot except ImportError: raise ImportError("read_dot() requires pydot", "http://code.google.com/p/pydot/") data=path.read() P=pydot.graph_from_dot_data(data) return from_pydot(P)
[docs]def from_pydot(P): """Return a NetworkX graph from a Pydot graph. Parameters ---------- P : Pydot graph A graph created with Pydot Returns ------- G : NetworkX multigraph A MultiGraph or MultiDiGraph. Examples -------- >>> K5=nx.complete_graph(5) >>> A=nx.to_pydot(K5) >>> G=nx.from_pydot(A) # return MultiGraph >>> G=nx.Graph(nx.from_pydot(A)) # make a Graph instead of MultiGraph """ if P.get_strict(None): # pydot bug: get_strict() shouldn't take argument multiedges=False else: multiedges=True if P.get_type()=='graph': # undirected if multiedges: create_using=nx.MultiGraph() else: create_using=nx.Graph() else: if multiedges: create_using=nx.MultiDiGraph() else: create_using=nx.DiGraph() # assign defaults N=nx.empty_graph(0,create_using) N.name=P.get_name() # add nodes, attributes to N.node_attr for p in P.get_node_list(): n=p.get_name().strip('"') if n in ('node','graph','edge'): continue N.add_node(n,**p.get_attributes()) # add edges for e in P.get_edge_list(): u=e.get_source() v=e.get_destination() attr=e.get_attributes() s=[] d=[] if isinstance(u, basestring): s.append(u.strip('"')) else: for unodes in u['nodes'].iterkeys(): s.append(unodes.strip('"')) if isinstance(v, basestring): d.append(v.strip('"')) else: for vnodes in v['nodes'].iterkeys(): d.append(vnodes.strip('"')) for source_node in s: for destination_node in d: N.add_edge(source_node,destination_node,**attr) # add default attributes for graph, nodes, edges N.graph['graph']=P.get_attributes() try: N.graph['node']=P.get_node_defaults()[0] except:# IndexError,TypeError: N.graph['node']={} try: N.graph['edge']=P.get_edge_defaults()[0] except:# IndexError,TypeError: N.graph['edge']={} return N
[docs]def to_pydot(N, strict=True): """Return a pydot graph from a NetworkX graph N. Parameters ---------- N : NetworkX graph A graph created with NetworkX Examples -------- >>> K5=nx.complete_graph(5) >>> P=nx.to_pydot(K5) Notes ----- """ try: import pydot except ImportError: raise ImportError('to_pydot() requires pydot: ' 'http://code.google.com/p/pydot/') # set Graphviz graph type if N.is_directed(): graph_type='digraph' else: graph_type='graph' strict=N.number_of_selfloops()==0 and not N.is_multigraph() name = N.graph.get('name') graph_defaults=N.graph.get('graph',{}) if name is None: P = pydot.Dot(graph_type=graph_type,strict=strict,**graph_defaults) else: P = pydot.Dot('"%s"'%name,graph_type=graph_type,strict=strict, **graph_defaults) try: P.set_node_defaults(**N.graph['node']) except KeyError: pass try: P.set_edge_defaults(**N.graph['edge']) except KeyError: pass for n,nodedata in N.nodes_iter(data=True): str_nodedata=dict((k,make_str(v)) for k,v in nodedata.items()) p=pydot.Node(make_str(n),**str_nodedata) P.add_node(p) if N.is_multigraph(): for u,v,key,edgedata in N.edges_iter(data=True,keys=True): str_edgedata=dict((k,make_str(v)) for k,v in edgedata.items()) edge=pydot.Edge(make_str(u),make_str(v),key=make_str(key),**str_edgedata) P.add_edge(edge) else: for u,v,edgedata in N.edges_iter(data=True): str_edgedata=dict((k,make_str(v)) for k,v in edgedata.items()) edge=pydot.Edge(make_str(u),make_str(v),**str_edgedata) P.add_edge(edge) return P
def pydot_from_networkx(N): """Create a Pydot graph from a NetworkX graph.""" from warnings import warn warn('pydot_from_networkx is replaced by to_pydot', DeprecationWarning) return to_pydot(N) def networkx_from_pydot(D, create_using=None): """Create a NetworkX graph from a Pydot graph.""" from warnings import warn warn('networkx_from_pydot is replaced by from_pydot', DeprecationWarning) return from_pydot(D)
[docs]def graphviz_layout(G,prog='neato',root=None, **kwds): """Create node positions using Pydot and Graphviz. Returns a dictionary of positions keyed by node. Examples -------- >>> G=nx.complete_graph(4) >>> pos=nx.graphviz_layout(G) >>> pos=nx.graphviz_layout(G,prog='dot') Notes ----- This is a wrapper for pydot_layout. """ return pydot_layout(G=G,prog=prog,root=root,**kwds)
[docs]def pydot_layout(G,prog='neato',root=None, **kwds): """Create node positions using Pydot and Graphviz. Returns a dictionary of positions keyed by node. Examples -------- >>> G=nx.complete_graph(4) >>> pos=nx.pydot_layout(G) >>> pos=nx.pydot_layout(G,prog='dot') """ try: import pydot except ImportError: raise ImportError('pydot_layout() requires pydot ', 'http://code.google.com/p/pydot/') P=to_pydot(G) if root is not None : P.set("root",make_str(root)) D=P.create_dot(prog=prog) if D=="": # no data returned print("Graphviz layout with %s failed"%(prog)) print() print("To debug what happened try:") print("P=pydot_from_networkx(G)") print("P.write_dot(\"file.dot\")") print("And then run %s on file.dot"%(prog)) return Q=pydot.graph_from_dot_data(D) node_pos={} for n in G.nodes(): pydot_node = pydot.Node(make_str(n)).get_name().encode('utf-8') node=Q.get_node(pydot_node) if isinstance(node,list): node=node[0] pos=node.get_pos()[1:-1] # strip leading and trailing double quotes if pos != None: xx,yy=pos.split(",") node_pos[n]=(float(xx),float(yy)) return node_pos # fixture for nose tests
def setup_module(module): from nose import SkipTest try: import pydot import dot_parser except: raise SkipTest("pydot not available")