# Copyright (C) 2006-2013 by
# Aric Hagberg <hagberg@lanl.gov>
# Dan Schult <dschult@colgate.edu>
# Pieter Swart <swart@lanl.gov>
# All rights reserved.
# BSD license.
import networkx as nx
__author__ = """\n""".join(['Aric Hagberg <aric.hagberg@gmail.com>',
'Pieter Swart (swart@lanl.gov)',
'Dan Schult (dschult@colgate.edu)'])
__all__ = ['convert_node_labels_to_integers', 'relabel_nodes']
[docs]def relabel_nodes(G, mapping, copy=True):
"""Relabel the nodes of the graph G.
Parameters
----------
G : graph
A NetworkX graph
mapping : dictionary
A dictionary with the old labels as keys and new labels as values.
A partial mapping is allowed.
copy : bool (optional, default=True)
If True return a copy, or if False relabel the nodes in place.
Examples
--------
>>> G=nx.path_graph(3) # nodes 0-1-2
>>> mapping={0:'a',1:'b',2:'c'}
>>> H=nx.relabel_nodes(G,mapping)
>>> print(sorted(H.nodes()))
['a', 'b', 'c']
>>> G=nx.path_graph(26) # nodes 0..25
>>> mapping=dict(zip(G.nodes(),"abcdefghijklmnopqrstuvwxyz"))
>>> H=nx.relabel_nodes(G,mapping) # nodes a..z
>>> mapping=dict(zip(G.nodes(),range(1,27)))
>>> G1=nx.relabel_nodes(G,mapping) # nodes 1..26
Partial in-place mapping:
>>> G=nx.path_graph(3) # nodes 0-1-2
>>> mapping={0:'a',1:'b'} # 0->'a' and 1->'b'
>>> G=nx.relabel_nodes(G,mapping, copy=False)
print(G.nodes())
[2, 'b', 'a']
Mapping as function:
>>> G=nx.path_graph(3)
>>> def mapping(x):
... return x**2
>>> H=nx.relabel_nodes(G,mapping)
>>> print(H.nodes())
[0, 1, 4]
Notes
-----
Only the nodes specified in the mapping will be relabeled.
The keyword setting copy=False modifies the graph in place.
This is not always possible if the mapping is circular.
In that case use copy=True.
See Also
--------
convert_node_labels_to_integers
"""
# you can pass a function f(old_label)->new_label
# but we'll just make a dictionary here regardless
if not hasattr(mapping,"__getitem__"):
m = dict((n,mapping(n)) for n in G)
else:
m=mapping
if copy:
return _relabel_copy(G,m)
else:
return _relabel_inplace(G,m)
def _relabel_inplace(G, mapping):
old_labels=set(mapping.keys())
new_labels=set(mapping.values())
if len(old_labels & new_labels) > 0:
# labels sets overlap
# can we topological sort and still do the relabeling?
D=nx.DiGraph(list(mapping.items()))
D.remove_edges_from(D.selfloop_edges())
try:
nodes=nx.topological_sort(D)
except nx.NetworkXUnfeasible:
raise nx.NetworkXUnfeasible('The node label sets are overlapping '
'and no ordering can resolve the '
'mapping. Use copy=True.')
nodes.reverse() # reverse topological order
else:
# non-overlapping label sets
nodes=old_labels
multigraph = G.is_multigraph()
directed = G.is_directed()
for old in nodes:
try:
new=mapping[old]
except KeyError:
continue
try:
G.add_node(new,attr_dict=G.node[old])
except KeyError:
raise KeyError("Node %s is not in the graph"%old)
if multigraph:
new_edges=[(new,old == target and new or target,key,data)
for (_,target,key,data)
in G.edges(old,data=True,keys=True)]
if directed:
new_edges+=[(old == source and new or source,new,key,data)
for (source,_,key,data)
in G.in_edges(old,data=True,keys=True)]
else:
new_edges=[(new,old == target and new or target,data)
for (_,target,data) in G.edges(old,data=True)]
if directed:
new_edges+=[(old == source and new or source,new,data)
for (source,_,data) in G.in_edges(old,data=True)]
G.remove_node(old)
G.add_edges_from(new_edges)
return G
def _relabel_copy(G, mapping):
H=G.__class__()
H.name="(%s)" % G.name
if G.is_multigraph():
H.add_edges_from( (mapping.get(n1,n1),mapping.get(n2,n2),k,d.copy())
for (n1,n2,k,d) in G.edges_iter(keys=True,data=True))
else:
H.add_edges_from( (mapping.get(n1,n1),mapping.get(n2,n2),d.copy())
for (n1,n2,d) in G.edges_iter(data=True))
H.add_nodes_from(mapping.get(n,n) for n in G)
H.node.update(dict((mapping.get(n,n),d.copy()) for n,d in G.node.items()))
H.graph.update(G.graph.copy())
return H
[docs]def convert_node_labels_to_integers(G, first_label=0, ordering="default",
label_attribute=None):
"""Return a copy of the graph G with the nodes relabeled with integers.
Parameters
----------
G : graph
A NetworkX graph
first_label : int, optional (default=0)
An integer specifying the offset in numbering nodes.
The n new integer labels are numbered first_label, ..., n-1+first_label.
ordering : string
"default" : inherit node ordering from G.nodes()
"sorted" : inherit node ordering from sorted(G.nodes())
"increasing degree" : nodes are sorted by increasing degree
"decreasing degree" : nodes are sorted by decreasing degree
label_attribute : string, optional (default=None)
Name of node attribute to store old label. If None no attribute
is created.
Notes
-----
Node and edge attribute data are copied to the new (relabeled) graph.
See Also
--------
relabel_nodes
"""
N = G.number_of_nodes()+first_label
if ordering == "default":
mapping = dict(zip(G.nodes(),range(first_label,N)))
elif ordering == "sorted":
nlist = G.nodes()
nlist.sort()
mapping=dict(zip(nlist,range(first_label,N)))
elif ordering == "increasing degree":
dv_pairs=[(d,n) for (n,d) in G.degree_iter()]
dv_pairs.sort() # in-place sort from lowest to highest degree
mapping = dict(zip([n for d,n in dv_pairs],range(first_label,N)))
elif ordering == "decreasing degree":
dv_pairs = [(d,n) for (n,d) in G.degree_iter()]
dv_pairs.sort() # in-place sort from lowest to highest degree
dv_pairs.reverse()
mapping = dict(zip([n for d,n in dv_pairs],range(first_label,N)))
else:
raise nx.NetworkXError('Unknown node ordering: %s'%ordering)
H = relabel_nodes(G,mapping)
H.name="("+G.name+")_with_int_labels"
# create node attribute with the old label
if label_attribute is not None:
nx.set_node_attributes(H, label_attribute,
dict((v,k) for k,v in mapping.items()))
return H