NetworkX

Source code for networkx.algorithms.shortest_paths.dense

# -*- coding: utf-8 -*-
"""
Floyd-Warshall algorithm for shortest paths.
"""
__author__ = """Aric Hagberg (hagberg@lanl.gov)"""
#    Copyright (C) 2004-2011 by 
#    Aric Hagberg <hagberg@lanl.gov>
#    Dan Schult <dschult@colgate.edu>
#    Pieter Swart <swart@lanl.gov>
#    All rights reserved.
#    BSD license.

__all__ = ['floyd_warshall',
           'floyd_warshall_predecessor_and_distance',
           'floyd_warshall_numpy']

import networkx as nx


[docs]def floyd_warshall_numpy(G, nodelist=None, weight='weight'): """Find all-pairs shortest path lengths using Floyd's algorithm. Parameters ---------- G : NetworkX graph nodelist : list, optional The rows and columns are ordered by the nodes in nodelist. If nodelist is None then the ordering is produced by G.nodes(). weight: string, optional (default= 'weight') Edge data key corresponding to the edge weight. Returns ------- distance : NumPy matrix A matrix of shortest path distances between nodes. If there is no path between to nodes the corresponding matrix entry will be Inf. Notes ------ Floyd's algorithm is appropriate for finding shortest paths in dense graphs or graphs with negative weights when Dijkstra's algorithm fails. This algorithm can still fail if there are negative cycles. It has running time O(n^3) with running space is O(n^2). """ try: import numpy as np except ImportError: raise ImportError(\ "to_numpy_matrix() requires numpy: http://scipy.org/ ") A=nx.to_numpy_matrix(G, nodelist=nodelist, multigraph_weight=min, weight=weight) n,m = A.shape I=np.identity(n) A[A==0]=np.inf # set zero entries to inf A[I==1]=0 # except diagonal which should be zero for i in range(n): r = A[i,:] A = np.minimum(A, r + r.T) return A
[docs]def floyd_warshall_predecessor_and_distance(G, weight='weight'): """Find all-pairs shortest path lengths using Floyd's algorithm. Parameters ---------- G : NetworkX graph weight: string, optional (default= 'weight') Edge data key corresponding to the edge weight. Returns ------- predecessor,distance : dictionaries Dictionaries, keyed by source and target, of predecessors and distances in the shortest path. Notes ------ Floyd's algorithm is appropriate for finding shortest paths in dense graphs or graphs with negative weights when Dijkstra's algorithm fails. This algorithm can still fail if there are negative cycles. It has running time O(n^3) with running space is O(n^2). See Also -------- floyd_warshall floyd_warshall_numpy all_pairs_shortest_path all_pairs_shortest_path_length """ from collections import defaultdict # dictionary-of-dictionaries representation for dist and pred # use some defaultdict magick here # for dist the default is the floating point inf value dist=defaultdict(lambda : defaultdict(lambda: float('inf'))) pred=defaultdict(dict) # initialize path distance dictionary to be the adjacency matrix # also set the distance to self to 0 (zero diagonal) undirected= not G.is_directed() for u,v,d in G.edges(data=True): e_weight = d.get(weight, 1.0) dist[u][v] = min(e_weight, dist[u][v]) pred[u][v] = u dist[u][u] = 0 if undirected: dist[v][u] = min(e_weight, dist[v][u]) pred[v][u] = v for w in G: for u in G: for v in G: if dist[u][v] > dist[u][w] + dist[w][v]: dist[u][v] = dist[u][w] + dist[w][v] pred[u][v] = pred[w][v] return dict(pred),dict(dist)
[docs]def floyd_warshall(G, weight='weight'): """Find all-pairs shortest path lengths using Floyd's algorithm. Parameters ---------- G : NetworkX graph weight: string, optional (default= 'weight') Edge data key corresponding to the edge weight. Returns ------- distance : dict A dictionary, keyed by source and target, of shortest paths distances between nodes. Notes ------ Floyd's algorithm is appropriate for finding shortest paths in dense graphs or graphs with negative weights when Dijkstra's algorithm fails. This algorithm can still fail if there are negative cycles. It has running time O(n^3) with running space is O(n^2). See Also -------- floyd_warshall_predecessor_and_distance floyd_warshall_numpy all_pairs_shortest_path all_pairs_shortest_path_length """ # could make this it's own function to reduce memory costs return floyd_warshall_predecessor_and_distance(G, weight=weight)[1] # fixture for nose tests
def setup_module(module): from nose import SkipTest try: import numpy except: raise SkipTest("NumPy not available")