# coding=utf8
"""
Katz centrality.
"""
# Copyright (C) 2004-2015 by
# Aric Hagberg <hagberg@lanl.gov>
# Dan Schult <dschult@colgate.edu>
# Pieter Swart <swart@lanl.gov>
# All rights reserved.
# BSD license.
import networkx as nx
from networkx.utils import not_implemented_for
__author__ = "\n".join(['Aric Hagberg (aric.hagberg@gmail.com)',
'Pieter Swart (swart@lanl.gov)',
'Sasha Gutfraind (ag362@cornell.edu)',
'Vincent Gauthier (vgauthier@luxbulb.org)'])
__all__ = ['katz_centrality',
'katz_centrality_numpy']
[docs]@not_implemented_for('multigraph')
def katz_centrality(G, alpha=0.1, beta=1.0,
max_iter=1000, tol=1.0e-6, nstart=None, normalized=True,
weight = 'weight'):
r"""Compute the Katz centrality for the nodes of the graph G.
Katz centrality computes the centrality for a node based on the centrality
of its neighbors. It is a generalization of the eigenvector centrality. The
Katz centrality for node `i` is
.. math::
x_i = \alpha \sum_{j} A_{ij} x_j + \beta,
where `A` is the adjacency matrix of the graph G with eigenvalues `\lambda`.
The parameter `\beta` controls the initial centrality and
.. math::
\alpha < \frac{1}{\lambda_{max}}.
Katz centrality computes the relative influence of a node within a
network by measuring the number of the immediate neighbors (first
degree nodes) and also all other nodes in the network that connect
to the node under consideration through these immediate neighbors.
Extra weight can be provided to immediate neighbors through the
parameter :math:`\beta`. Connections made with distant neighbors
are, however, penalized by an attenuation factor `\alpha` which
should be strictly less than the inverse largest eigenvalue of the
adjacency matrix in order for the Katz centrality to be computed
correctly. More information is provided in [1]_ .
Parameters
----------
G : graph
A NetworkX graph
alpha : float
Attenuation factor
beta : scalar or dictionary, optional (default=1.0)
Weight attributed to the immediate neighborhood. If not a scalar, the
dictionary must have an value for every node.
max_iter : integer, optional (default=1000)
Maximum number of iterations in power method.
tol : float, optional (default=1.0e-6)
Error tolerance used to check convergence in power method iteration.
nstart : dictionary, optional
Starting value of Katz iteration for each node.
normalized : bool, optional (default=True)
If True normalize the resulting values.
weight : None or string, optional
If None, all edge weights are considered equal.
Otherwise holds the name of the edge attribute used as weight.
Returns
-------
nodes : dictionary
Dictionary of nodes with Katz centrality as the value.
Raises
------
NetworkXError
If the parameter `beta` is not a scalar but lacks a value for at least
one node
Examples
--------
>>> import math
>>> G = nx.path_graph(4)
>>> phi = (1+math.sqrt(5))/2.0 # largest eigenvalue of adj matrix
>>> centrality = nx.katz_centrality(G,1/phi-0.01)
>>> for n,c in sorted(centrality.items()):
... print("%d %0.2f"%(n,c))
0 0.37
1 0.60
2 0.60
3 0.37
See Also
--------
katz_centrality_numpy
eigenvector_centrality
eigenvector_centrality_numpy
pagerank
hits
Notes
-----
Katz centrality was introduced by [2]_.
This algorithm it uses the power method to find the eigenvector
corresponding to the largest eigenvalue of the adjacency matrix of G.
The constant alpha should be strictly less than the inverse of largest
eigenvalue of the adjacency matrix for the algorithm to converge.
The iteration will stop after max_iter iterations or an error tolerance of
number_of_nodes(G)*tol has been reached.
When `\alpha = 1/\lambda_{max}` and `\beta=0`, Katz centrality is the same
as eigenvector centrality.
For directed graphs this finds "left" eigenvectors which corresponds
to the in-edges in the graph. For out-edges Katz centrality
first reverse the graph with G.reverse().
References
----------
.. [1] Mark E. J. Newman:
Networks: An Introduction.
Oxford University Press, USA, 2010, p. 720.
.. [2] Leo Katz:
A New Status Index Derived from Sociometric Index.
Psychometrika 18(1):39–43, 1953
http://phya.snu.ac.kr/~dkim/PRL87278701.pdf
"""
from math import sqrt
if len(G) == 0:
return {}
nnodes = G.number_of_nodes()
if nstart is None:
# choose starting vector with entries of 0
x = dict([(n,0) for n in G])
else:
x = nstart
try:
b = dict.fromkeys(G,float(beta))
except (TypeError,ValueError,AttributeError):
b = beta
if set(beta) != set(G):
raise nx.NetworkXError('beta dictionary '
'must have a value for every node')
# make up to max_iter iterations
for i in range(max_iter):
xlast = x
x = dict.fromkeys(xlast, 0)
# do the multiplication y^T = Alpha * x^T A - Beta
for n in x:
for nbr in G[n]:
x[nbr] += xlast[n] * G[n][nbr].get(weight, 1)
for n in x:
x[n] = alpha*x[n] + b[n]
# check convergence
err = sum([abs(x[n]-xlast[n]) for n in x])
if err < nnodes*tol:
if normalized:
# normalize vector
try:
s = 1.0/sqrt(sum(v**2 for v in x.values()))
# this should never be zero?
except ZeroDivisionError:
s = 1.0
else:
s = 1
for n in x:
x[n] *= s
return x
raise nx.NetworkXError('Power iteration failed to converge in '
'%d iterations.' % max_iter)
[docs]@not_implemented_for('multigraph')
def katz_centrality_numpy(G, alpha=0.1, beta=1.0, normalized=True,
weight = 'weight'):
r"""Compute the Katz centrality for the graph G.
Katz centrality computes the centrality for a node based on the centrality
of its neighbors. It is a generalization of the eigenvector centrality. The
Katz centrality for node `i` is
.. math::
x_i = \alpha \sum_{j} A_{ij} x_j + \beta,
where `A` is the adjacency matrix of the graph G with eigenvalues `\lambda`.
The parameter `\beta` controls the initial centrality and
.. math::
\alpha < \frac{1}{\lambda_{max}}.
Katz centrality computes the relative influence of a node within a
network by measuring the number of the immediate neighbors (first
degree nodes) and also all other nodes in the network that connect
to the node under consideration through these immediate neighbors.
Extra weight can be provided to immediate neighbors through the
parameter :math:`\beta`. Connections made with distant neighbors
are, however, penalized by an attenuation factor `\alpha` which
should be strictly less than the inverse largest eigenvalue of the
adjacency matrix in order for the Katz centrality to be computed
correctly. More information is provided in [1]_ .
Parameters
----------
G : graph
A NetworkX graph
alpha : float
Attenuation factor
beta : scalar or dictionary, optional (default=1.0)
Weight attributed to the immediate neighborhood. If not a scalar the
dictionary must have an value for every node.
normalized : bool
If True normalize the resulting values.
weight : None or string, optional
If None, all edge weights are considered equal.
Otherwise holds the name of the edge attribute used as weight.
Returns
-------
nodes : dictionary
Dictionary of nodes with Katz centrality as the value.
Raises
------
NetworkXError
If the parameter `beta` is not a scalar but lacks a value for at least
one node
Examples
--------
>>> import math
>>> G = nx.path_graph(4)
>>> phi = (1+math.sqrt(5))/2.0 # largest eigenvalue of adj matrix
>>> centrality = nx.katz_centrality_numpy(G,1/phi)
>>> for n,c in sorted(centrality.items()):
... print("%d %0.2f"%(n,c))
0 0.37
1 0.60
2 0.60
3 0.37
See Also
--------
katz_centrality
eigenvector_centrality_numpy
eigenvector_centrality
pagerank
hits
Notes
-----
Katz centrality was introduced by [2]_.
This algorithm uses a direct linear solver to solve the above equation.
The constant alpha should be strictly less than the inverse of largest
eigenvalue of the adjacency matrix for there to be a solution. When
`\alpha = 1/\lambda_{max}` and `\beta=0`, Katz centrality is the same as
eigenvector centrality.
For directed graphs this finds "left" eigenvectors which corresponds
to the in-edges in the graph. For out-edges Katz centrality
first reverse the graph with G.reverse().
References
----------
.. [1] Mark E. J. Newman:
Networks: An Introduction.
Oxford University Press, USA, 2010, p. 720.
.. [2] Leo Katz:
A New Status Index Derived from Sociometric Index.
Psychometrika 18(1):39–43, 1953
http://phya.snu.ac.kr/~dkim/PRL87278701.pdf
"""
try:
import numpy as np
except ImportError:
raise ImportError('Requires NumPy: http://scipy.org/')
if len(G) == 0:
return {}
try:
nodelist = beta.keys()
if set(nodelist) != set(G):
raise nx.NetworkXError('beta dictionary '
'must have a value for every node')
b = np.array(list(beta.values()), dtype=float)
except AttributeError:
nodelist = G.nodes()
try:
b = np.ones((len(nodelist),1))*float(beta)
except (TypeError,ValueError,AttributeError):
raise nx.NetworkXError('beta must be a number')
A = nx.adj_matrix(G, nodelist=nodelist, weight=weight).todense().T
n = np.array(A).shape[0]
centrality = np.linalg.solve( np.eye(n,n) - (alpha * A) , b)
if normalized:
norm = np.sign(sum(centrality)) * np.linalg.norm(centrality)
else:
norm = 1.0
centrality = dict(zip(nodelist, map(float,centrality/norm)))
return centrality
# fixture for nose tests
def setup_module(module):
from nose import SkipTest
try:
import numpy
import scipy
except:
raise SkipTest("SciPy not available")